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CPR-C4 - a conserved novel protease from the Candidate Phyla Radiation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Morpheus screen (Molecular Dimensions)
Crystal Properties Matthews coefficient Solvent content 3.9 68.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.392 α = 90 b = 123.392 β = 90 c = 96.53 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-05-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763, 1.2824 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.598 48.26 99.8 0.094 0.106 0.05 1 14.4 8.5 26494
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.71 4.086 4.649 2.198 0.368 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.598 46.791 26479 1313 99.751 0.237 0.2344 0.2853 0.2586 102.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.42 1.71 3.42 -11.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.248 r_lrange_it 18.869 r_dihedral_angle_3_deg 14.228 r_scangle_it 14.194 r_dihedral_angle_4_deg 13.393 r_mcangle_it 12.646 r_scbond_it 10.567 r_mcbond_it 8.964 r_dihedral_angle_1_deg 7.331 r_angle_refined_deg 1.418
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.248 r_lrange_it 18.869 r_dihedral_angle_3_deg 14.228 r_scangle_it 14.194 r_dihedral_angle_4_deg 13.393 r_mcangle_it 12.646 r_scbond_it 10.567 r_mcbond_it 8.964 r_dihedral_angle_1_deg 7.331 r_angle_refined_deg 1.418 r_ext_dist_refined_d 0.323 r_symmetry_nbd_refined 0.302 r_nbtor_refined 0.295 r_nbd_refined 0.202 r_symmetry_xyhbond_nbd_refined 0.188 r_symmetry_metal_ion_refined 0.172 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.094 r_metal_ion_refined 0.084 r_ncsr_local_group_1 0.072 r_gen_planes_refined 0.007 r_bond_refined_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3347 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling XDS data reduction pointless data scaling SHELX phasing