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conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors, mutant beta1/A, crystal form I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.1M tri-sodium citrate pH 4.5, 7.1 % (w/v) PEG 10000
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.811 α = 90 b = 37.365 β = 98.981 c = 90.232 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9998 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 34.46 99.7 0.072 1 13.37 6.61 13455
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.28 99.9 1.128 0.7 1.61 6.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7OAA 2.15 34.459 13454 673 99.755 0.238 0.2366 0.2381 0.2576 0.2621 60.836
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.614 -4.382 -0.931 4.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.786 r_dihedral_angle_4_deg 22.097 r_dihedral_angle_3_deg 16.423 r_lrange_it 10.442 r_lrange_other 10.43 r_scangle_it 8.654 r_scangle_other 8.651 r_scbond_it 5.469 r_scbond_other 5.467 r_mcangle_it 5.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.786 r_dihedral_angle_4_deg 22.097 r_dihedral_angle_3_deg 16.423 r_lrange_it 10.442 r_lrange_other 10.43 r_scangle_it 8.654 r_scangle_other 8.651 r_scbond_it 5.469 r_scbond_other 5.467 r_mcangle_it 5.32 r_mcangle_other 5.318 r_dihedral_angle_1_deg 4.711 r_mcbond_other 3.877 r_mcbond_it 3.876 r_angle_refined_deg 1.417 r_angle_other_deg 1.196 r_symmetry_xyhbond_nbd_refined 0.297 r_nbd_other 0.292 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.205 r_nbtor_refined 0.186 r_symmetry_nbd_other 0.164 r_symmetry_nbd_refined 0.155 r_ncsr_local_group_3 0.126 r_ncsr_local_group_1 0.12 r_ncsr_local_group_2 0.107 r_chiral_restr 0.075 r_symmetry_nbtor_other 0.071 r_xyhbond_nbd_other 0.017 r_bond_refined_d 0.013 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2034 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing