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conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5APT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.1M HEPES pH 7.5, 30% (w/v) PEG 300
Crystal Properties Matthews coefficient Solvent content 1.94 36.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.243 α = 90 b = 38.243 β = 90 c = 279.665 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0704 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 32.89 91.5 0.054 1 24.3 17.6 10751
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.47 0.662 0.978 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5apt 1.4 32.89 10751 535 65.981 0.233 0.2308 0.2293 0.2685 0.2653 18.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.145 0.29 -0.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.536 r_dihedral_angle_3_deg 12.667 r_dihedral_angle_4_deg 8.089 r_lrange_it 6.123 r_lrange_other 6.05 r_dihedral_angle_1_deg 4.029 r_scangle_it 3.834 r_scangle_other 3.821 r_scbond_it 2.308 r_mcangle_other 2.275
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.536 r_dihedral_angle_3_deg 12.667 r_dihedral_angle_4_deg 8.089 r_lrange_it 6.123 r_lrange_other 6.05 r_dihedral_angle_1_deg 4.029 r_scangle_it 3.834 r_scangle_other 3.821 r_scbond_it 2.308 r_mcangle_other 2.275 r_scbond_other 2.266 r_mcangle_it 2.218 r_mcbond_it 1.368 r_mcbond_other 1.248 r_angle_refined_deg 0.687 r_angle_other_deg 0.596 r_nbd_refined 0.202 r_nbtor_refined 0.174 r_symmetry_nbd_refined 0.141 r_symmetry_nbd_other 0.134 r_xyhbond_nbd_refined 0.122 r_nbd_other 0.101 r_symmetry_nbtor_other 0.072 r_symmetry_xyhbond_nbd_refined 0.052 r_chiral_restr 0.037 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 692 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction STARANISO data scaling MOLREP phasing