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hypothetical protein OMM_04225 residues 244-274 from Candidatus Magnetoglobus multicellularis fused to GCN4 adaptors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YNY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.2M KSCN, 0.1M bis tris propane pH 8.5, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.88 34.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.827 α = 90 b = 34.649 β = 93.48 c = 82.547 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 37.04 89.3 0.124 0.998 8.5 6.5 11390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.12 81.4 1.671 0.657 1.1 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2YNY 1.99 37.04 10611 779 67.17 0.2656 0.2618 0.2592 0.3149 0.315 RANDOM 44.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 1.18 1.16 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.641 r_dihedral_angle_4_deg 19.155 r_dihedral_angle_3_deg 17.556 r_dihedral_angle_1_deg 5.964 r_angle_refined_deg 1.733 r_angle_other_deg 1.401 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.641 r_dihedral_angle_4_deg 19.155 r_dihedral_angle_3_deg 17.556 r_dihedral_angle_1_deg 5.964 r_angle_refined_deg 1.733 r_angle_other_deg 1.401 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2026 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction STARANISO data scaling MOLREP phasing