7O1R

Unspecific peroxygenase from Hypoxylon sp. EC38 in complex with imidazole


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FUK 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320% PEG500 MME, 10% PEG20000, 0.1 M MES monohydrate pH 6.5, 0.1 M Imidazole
Crystal Properties
Matthews coefficientSolvent content
3.4764.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.726α = 90
b = 71.726β = 90
c = 153.704γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-10-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.348.211000.1580.1610.0320.99914.825.899264
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.321004.7714.870.9730.44324.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5FUK1.348.2196147300099.990.14040.13980.1582RANDOM17.582
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.20.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.364
r_dihedral_angle_4_deg16.162
r_dihedral_angle_3_deg11.066
r_rigid_bond_restr7.827
r_dihedral_angle_1_deg5.928
r_angle_refined_deg2.286
r_angle_other_deg1.711
r_chiral_restr0.125
r_bond_refined_d0.021
r_gen_planes_refined0.013
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.364
r_dihedral_angle_4_deg16.162
r_dihedral_angle_3_deg11.066
r_rigid_bond_restr7.827
r_dihedral_angle_1_deg5.928
r_angle_refined_deg2.286
r_angle_other_deg1.711
r_chiral_restr0.125
r_bond_refined_d0.021
r_gen_planes_refined0.013
r_gen_planes_other0.009
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1757
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms99

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing