☰ Navigation Tabs
Structure of the C-terminal domain of the pUL77 capsid protein from human cytomegalovirus (HCMV)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F5U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.08 M Na-Cacodylate pH 6.5
16% PEG 8000
20 % glycerol
Crystal Properties Matthews coefficient Solvent content 3.56 65.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.907 α = 90 b = 163.907 β = 90 c = 50.965 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978570 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.896 50 99.5 0.999 16.66 8.6 55350
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.896 2.01 0.659
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F5U 1.896 46.65 55350 2812 99.5 0.1923 0.1915 0.1845 0.2081 0.2001 RANDOM 42.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.7027 -3.7027 7.4054
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 14.99 t_omega_torsion 3.2 t_angle_deg 0.88 t_bond_d 0.01 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3402 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 12
Software Software Software Name Purpose BUSTER refinement XDS data reduction XSCALE data scaling PHASER phasing