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Solution structure of toll like receptor 1 (TLR1) TIR domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 2 3D HNCACB 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 3 3D HCCH-TOCSY 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 4 3D HCCH-COSY 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 5 3D 1H-13C NOESY 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 6 3D 1H-13C NOESY aromatic 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800 7 3D 1H-15N NOESY 0.8 mM [U-100% 13C; U-100% 15N] TLR1-TIR, 20 mM PIPES, 25 mM sodium chloride, 3 mM TCEP 95% H2O/5% D2O 50 mM 6.3 AMBIENT Pa 308 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment CARA 1.9.1 Keller and Wuthrich 3 processing qMDD 2.7 Orekhov, Mayzel 4 processing TopSpin Bruker Biospin 5 peak picking CARA 1.9.1 Keller and Wuthrich