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The structure of the SBP TarP_Csal in complex with caffeate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 290 0.2 M MgCl2, 0.1 M MES pH 6.0 and 20% (w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.01 38.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.73 α = 90 b = 119.54 β = 90 c = 61.94 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97258, 0.97841, 0.97625 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 67.47 98.6 0.079 0.029 18.4 10.7 70139
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 88.8 0.568 0.346 2 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.67 67.468 70082 3439 98.511 0.209 0.2056 0.2167 0.2652 0.2704 23.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.156 -2.504 -1.653
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.008 r_scbond_it 26.722 r_scbond_other 26.717 r_scangle_it 20.858 r_scangle_other 20.856 r_lrange_other 18.889 r_lrange_it 18.856 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_3_deg 13.517 r_mcangle_other 7.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.008 r_scbond_it 26.722 r_scbond_other 26.717 r_scangle_it 20.858 r_scangle_other 20.856 r_lrange_other 18.889 r_lrange_it 18.856 r_dihedral_angle_4_deg 17.619 r_dihedral_angle_3_deg 13.517 r_mcangle_other 7.88 r_mcangle_it 7.877 r_mcbond_it 7.762 r_mcbond_other 7.726 r_dihedral_angle_1_deg 6.46 r_angle_refined_deg 1.499 r_angle_other_deg 1.332 r_symmetry_nbd_refined 0.272 r_nbd_refined 0.194 r_nbd_other 0.188 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.163 r_xyhbond_nbd_refined 0.148 r_metal_ion_refined 0.142 r_symmetry_xyhbond_nbd_refined 0.133 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5102 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELXCD phasing SHELXE model building