☰ Navigation Tabs
The structure of the SBP TarP_Sse in complex with cinnamate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 1.6 M tri-sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.59 52.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.12 α = 90 b = 70.2 β = 93.12 c = 85.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9500 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 64.02 98.6 0.092 0.079 9.9 3.2 57762
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 99.8 0.559 0.41 2.1 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7NR2 1.91 64.02 57745 2852 98.499 0.203 0.2001 0.2096 0.2608 0.2676 30.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.606 0.697 -1.28 2.793
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.387 r_scbond_other 30.107 r_scbond_it 30.104 r_mcbond_it 26.186 r_mcbond_other 26.076 r_lrange_it 25.039 r_lrange_other 25.037 r_scangle_other 24.941 r_scangle_it 24.94 r_mcangle_other 21.818
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.387 r_scbond_other 30.107 r_scbond_it 30.104 r_mcbond_it 26.186 r_mcbond_other 26.076 r_lrange_it 25.039 r_lrange_other 25.037 r_scangle_other 24.941 r_scangle_it 24.94 r_mcangle_other 21.818 r_mcangle_it 21.789 r_dihedral_angle_4_deg 18.995 r_dihedral_angle_3_deg 14.293 r_dihedral_angle_1_deg 7.12 r_angle_refined_deg 1.509 r_angle_other_deg 1.315 r_nbd_other 0.229 r_symmetry_xyhbond_nbd_refined 0.225 r_symmetry_nbd_refined 0.221 r_nbd_refined 0.203 r_symmetry_nbd_other 0.173 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.151 r_symmetry_xyhbond_nbd_other 0.082 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.072 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_refined_d 0.007 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5015 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing