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The structure of the SBP TarP_Rhp in complex with 4-hydroxyphenylacetate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 290 0.1 M Tris-HCl pH 8 and 20 % (w/v) PEG 6000 (+6 mM coumarate - not bound)
Crystal Properties Matthews coefficient Solvent content 1.98 37.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.67 α = 90 b = 50.5 β = 90 c = 142.56 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2014-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50.5 99.6 0.05 0.023 17 6.3 113835
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 96.1 0.436 0.328 2.2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.1 47.647 113736 5623 99.583 0.119 0.1178 0.1384 0.1498 11.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.026 -0.128 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.539 r_dihedral_angle_other_3_deg 19.546 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 12.164 r_dihedral_angle_1_deg 6.158 r_lrange_it 2.901 r_lrange_other 2.901 r_rigid_bond_restr 2.516 r_scangle_it 2.081 r_scangle_other 2.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.539 r_dihedral_angle_other_3_deg 19.546 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 12.164 r_dihedral_angle_1_deg 6.158 r_lrange_it 2.901 r_lrange_other 2.901 r_rigid_bond_restr 2.516 r_scangle_it 2.081 r_scangle_other 2.077 r_angle_refined_deg 1.817 r_scbond_it 1.731 r_scbond_other 1.73 r_angle_other_deg 1.593 r_mcangle_it 1.416 r_mcangle_other 1.415 r_mcbond_it 1.057 r_mcbond_other 1.054 r_nbd_refined 0.221 r_symmetry_nbd_refined 0.197 r_nbtor_refined 0.186 r_nbd_other 0.185 r_symmetry_nbd_other 0.175 r_symmetry_xyhbond_nbd_refined 0.17 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.111 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_xyhbond_nbd_other 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_symmetry_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2483 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Arcimboldo phasing