7NPY

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 6-benzyl-N2-methyl-N4-((1S,2S)-2-methylcyclopropyl)pyridine-2,4-dicarboxamide

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	30% PEG 300, 0.1M MES buffer pH6.5

Crystal Properties
Matthews coefficient	Solvent content
2.25	45.35

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 72.047	α = 90
b = 52.31	β = 90
c = 32.087	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU		2014-09-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E+ SUPERBRIGHT	1.54178

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	52.31	95.5	0.018	0.999	36.8	2.9		15851

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.69	75.2		0.094	0.89	9.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.601	14.656	15752	774	94.829	0.147	0.1459	0.16	0.1731	0.18	20.646

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.249			-0.192		0.441

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.057
r_dihedral_angle_4_deg	20.322
r_dihedral_angle_3_deg	10.917
r_lrange_it	5.208
r_lrange_other	5.009
r_dihedral_angle_1_deg	4.731
r_scangle_it	2.54
r_scangle_other	2.538
r_mcangle_other	1.804
r_mcangle_it	1.797
r_scbond_it	1.511
r_scbond_other	1.51
r_angle_other_deg	1.34
r_angle_refined_deg	1.235
r_mcbond_it	1.064
r_mcbond_other	1.01
r_nbd_refined	0.208
r_nbtor_refined	0.174
r_symmetry_nbd_other	0.169
r_symmetry_nbd_refined	0.165
r_nbd_other	0.121
r_xyhbond_nbd_refined	0.094
r_symmetry_xyhbond_nbd_refined	0.082
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.067
r_symmetry_xyhbond_nbd_other	0.017
r_gen_planes_refined	0.005
r_bond_refined_d	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	912
Nucleic Acid Atoms
Solvent Atoms	162
Heterogen Atoms	36

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling