7NKY
RNA Polymerase II-Spt4/5-nucleosome-FACT structure
ELECTRON MICROSCOPY
| Sample |
|---|
| Complex of RNA polymerase II-Spt4/5-FACT-nucleosome |
| Sample Components |
| RNA (5'-R(P*UP*CP*UP*UP*UP*UP*AP*UP*UP*UP*UP*UP*UP*CP*UP*G)-3') |
| DNA (138-MER) |
| DNA (148-MER) |
| DNA-directed RNA polymerase II subunit RPB1 |
| DNA-directed RNA polymerase II subunit RPB2 |
| DNA-directed RNA polymerase II subunit RPB3 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC1 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 |
| DNA-directed RNA polymerase II subunit RPB9 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
| DNA-directed RNA polymerase II subunit RPB11 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC4 |
| Chromatin elongation factor SPT4 |
| Transcription elongation factor SPT5 |
| DNA-directed RNA polymerase II subunit RPB4 |
| DNA-directed RNA polymerase II subunit RPB7 |
| FACT complex subunit POB3 |
| FACT complex subunit SPT16 |
| Histone H3.2 |
| Histone H4 |
| Histone H2A type 1 |
| Histone H2B 1.1 |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 47138 |
| Reported Resolution (Å) | 3.2 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | |||||
| Refinement Protocol | |||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K3 BIOQUANTUM (6k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 40.25 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| CLASSIFICATION | RELION | 3.0 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | ||||
