X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1UW6 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG3350 3% Ammonium sulphate 1.8M HEPES buffer 0.1M, pH 7.75
Crystal Properties
Matthews coefficientSolvent content
2.0740.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.7α = 90
b = 121.1β = 90
c = 241.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2020-04-04MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.976238MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123099.10.99912.7713.678150840
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12299.10.5291.32

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1UW6247.53143982757899.550.214010.212490.24322RANDOM53.479
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.67-0.93-1.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.707
r_dihedral_angle_4_deg18.744
r_dihedral_angle_3_deg13.269
r_long_range_B_other11.318
r_long_range_B_refined11.304
r_scangle_other8.636
r_dihedral_angle_1_deg7.572
r_mcangle_it6.003
r_mcangle_other6.003
r_scbond_it5.849
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.707
r_dihedral_angle_4_deg18.744
r_dihedral_angle_3_deg13.269
r_long_range_B_other11.318
r_long_range_B_refined11.304
r_scangle_other8.636
r_dihedral_angle_1_deg7.572
r_mcangle_it6.003
r_mcangle_other6.003
r_scbond_it5.849
r_scbond_other5.849
r_mcbond_it4.407
r_mcbond_other4.397
r_angle_refined_deg1.563
r_angle_other_deg1.264
r_chiral_restr0.062
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16131
Nucleic Acid Atoms
Solvent Atoms486
Heterogen Atoms285

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing
XSCALEdata scaling
XDSdata reduction