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TPR-rich domain of EccA3 from M. smegmatis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 292.15 0.1 M MES pH6.5, 10 %(v/v) dioxane, 1.6 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.34 63.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.001 α = 90 b = 159.001 β = 90 c = 43.364 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.976241 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 45.94 100 0.068 0.071 0.027 0.999 18.7 10 53900 22.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 98.3 0.997
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 45.94 51088 2810 99.98 0.13575 0.13393 0.1413 0.16994 0.1779 RANDOM 31.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.14 0.27 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.911 r_dihedral_angle_4_deg 11.345 r_dihedral_angle_3_deg 10.991 r_dihedral_angle_1_deg 4.478 r_long_range_B_refined 3.932 r_long_range_B_other 3.691 r_scangle_other 3.554 r_scbond_it 3.148 r_scbond_other 2.839 r_rigid_bond_restr 2.437
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.911 r_dihedral_angle_4_deg 11.345 r_dihedral_angle_3_deg 10.991 r_dihedral_angle_1_deg 4.478 r_long_range_B_refined 3.932 r_long_range_B_other 3.691 r_scangle_other 3.554 r_scbond_it 3.148 r_scbond_other 2.839 r_rigid_bond_restr 2.437 r_mcangle_it 2.406 r_mcangle_other 2.406 r_mcbond_it 1.857 r_mcbond_other 1.844 r_angle_refined_deg 1.417 r_angle_other_deg 1.258 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2137 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXD phasing