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Co-complex CYP46A1 with 0420 (compound 6)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LRL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 290 17.5% PEG 3350, 0.4M Calcium chloride
Crystal Properties Matthews coefficient Solvent content 2.13 42.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.494 α = 90 b = 63.679 β = 90 c = 124.637 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.976 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 45 99.2 0.104 18.2 6.8 58262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.66 99 0.98 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7LRL 1.631 35.436 58262 2876 99.161 0.169 0.1669 0.2004 0.2091 20.756
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.309 0.299 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.733 r_dihedral_angle_4_deg 16.542 r_dihedral_angle_3_deg 14.375 r_dihedral_angle_1_deg 5.843 r_lrange_it 5.264 r_lrange_other 5.161 r_scangle_it 2.383 r_scangle_other 2.383 r_angle_refined_deg 1.816 r_scbond_other 1.559
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.733 r_dihedral_angle_4_deg 16.542 r_dihedral_angle_3_deg 14.375 r_dihedral_angle_1_deg 5.843 r_lrange_it 5.264 r_lrange_other 5.161 r_scangle_it 2.383 r_scangle_other 2.383 r_angle_refined_deg 1.816 r_scbond_other 1.559 r_scbond_it 1.558 r_angle_other_deg 1.514 r_mcangle_it 1.3 r_mcangle_other 1.3 r_mcbond_it 0.805 r_mcbond_other 0.802 r_symmetry_nbd_refined 0.323 r_nbd_refined 0.223 r_nbd_other 0.22 r_xyhbond_nbd_refined 0.207 r_symmetry_xyhbond_nbd_refined 0.192 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_other 0.149 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_gen_planes_other 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3499 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing