7N0W

Rigidity of loop 1 contributes to equipotency of globular and ribbon isomers of alpha-conotoxin AusIA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP296.150.1 M calcium acetate hydrate, 12% PEG400, 0.1M MES pH 6.0
Crystal Properties
Matthews coefficientSolvent content
2.5451.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.331α = 90
b = 76.331β = 90
c = 352.926γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-12-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.95373Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45948.399.20.07619.52044280
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.462.551.082.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5t902.4648.342280199698.890.212620.211260.24046RANDOM75.417
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.610.310.61-1.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.446
r_dihedral_angle_3_deg16.157
r_dihedral_angle_4_deg14.867
r_long_range_B_refined8.497
r_long_range_B_other8.497
r_dihedral_angle_1_deg7.614
r_scangle_other5.667
r_mcangle_it4.764
r_mcangle_other4.763
r_scbond_it3.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.446
r_dihedral_angle_3_deg16.157
r_dihedral_angle_4_deg14.867
r_long_range_B_refined8.497
r_long_range_B_other8.497
r_dihedral_angle_1_deg7.614
r_scangle_other5.667
r_mcangle_it4.764
r_mcangle_other4.763
r_scbond_it3.79
r_scbond_other3.789
r_mcbond_it3.13
r_mcbond_other3.129
r_angle_refined_deg1.683
r_angle_other_deg1.102
r_chiral_restr0.104
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8219
Nucleic Acid Atoms
Solvent Atoms67
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
Aimlessdata scaling
PHENIXphasing