☰ Navigation Tabs
Rigidity of loop 1 contributes to equipotency of globular and ribbon isomers of alpha-conotoxin AusIA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5T90
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296.15 0.1 M calcium acetate hydrate, 12% PEG400, 0.1M MES pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.54 51.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.331 α = 90 b = 76.331 β = 90 c = 352.926 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95373 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.459 48.3 99.2 0.076 19.5 20 44280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.55 1.08 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5t90 2.46 48.3 42280 1996 98.89 0.21262 0.21126 0.217 0.24046 0.2454 RANDOM 75.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.31 0.61 -1.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.446 r_dihedral_angle_3_deg 16.157 r_dihedral_angle_4_deg 14.867 r_long_range_B_refined 8.497 r_long_range_B_other 8.497 r_dihedral_angle_1_deg 7.614 r_scangle_other 5.667 r_mcangle_it 4.764 r_mcangle_other 4.763 r_scbond_it 3.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.446 r_dihedral_angle_3_deg 16.157 r_dihedral_angle_4_deg 14.867 r_long_range_B_refined 8.497 r_long_range_B_other 8.497 r_dihedral_angle_1_deg 7.614 r_scangle_other 5.667 r_mcangle_it 4.764 r_mcangle_other 4.763 r_scbond_it 3.79 r_scbond_other 3.789 r_mcbond_it 3.13 r_mcbond_other 3.129 r_angle_refined_deg 1.683 r_angle_other_deg 1.102 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8219 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction Aimless data scaling PHENIX phasing