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Se-CrtE C-term His-tag with IPP added
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MXZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 293 200 nL of protein at 10 mg/mL was added to 200 nL of reservoir consisting of 90 mM CHES pH 9.5, 180 mM magnesium sulfate, 100 mM trisodium citrate, 22.5% (w/v) PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.423 α = 90 b = 144.627 β = 95.249 c = 48.066 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 48.21 99.9 0.345 0.113 0.986 5.7 10 45579
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 2.327 0.781 0.392 1.1 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7mxz 2.02 45.482 40321 2053 99.866 0.182 0.1804 0.1917 0.2088 0.2189 22.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.512 -0.154 -1.333 1.842
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.028 r_dihedral_angle_4_deg 19.68 r_dihedral_angle_3_deg 13.325 r_lrange_it 6.738 r_lrange_other 6.685 r_dihedral_angle_1_deg 5.161 r_scangle_it 4.122 r_scangle_other 4.105 r_mcangle_it 2.639 r_mcangle_other 2.639
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.028 r_dihedral_angle_4_deg 19.68 r_dihedral_angle_3_deg 13.325 r_lrange_it 6.738 r_lrange_other 6.685 r_dihedral_angle_1_deg 5.161 r_scangle_it 4.122 r_scangle_other 4.105 r_mcangle_it 2.639 r_mcangle_other 2.639 r_scbond_it 2.62 r_scbond_other 2.59 r_mcbond_it 1.662 r_mcbond_other 1.662 r_angle_refined_deg 1.407 r_angle_other_deg 1.393 r_nbd_refined 0.217 r_symmetry_nbd_other 0.182 r_metal_ion_refined 0.167 r_symmetry_xyhbond_nbd_refined 0.162 r_nbtor_refined 0.158 r_xyhbond_nbd_refined 0.157 r_nbd_other 0.153 r_dihedral_angle_other_2_deg 0.13 r_symmetry_nbd_refined 0.092 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4347 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing