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The TAM domain of BAZ2A in complex with a 12mer mCG DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3C2I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 10% PEG 3350, 0.2M L-Proline, 0.1M Hepes pH7.5
Crystal Properties Matthews coefficient Solvent content 2.87 57.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.202 α = 90 b = 73.202 β = 90 c = 262.068 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979176 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 37.44 99.9 0.049 0.05 0.008 1 48.5 35.5 37208
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.88 99.1 0.951 0.976 0.214 0.872 3.8 20
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3C2I 1.84 36.63 35244 1855 99.92 0.2135 0.2127 0.222 0.2297 0.2372 RANDOM 38.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.25 -0.5 1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.731 r_dihedral_angle_4_deg 13.396 r_dihedral_angle_3_deg 13.389 r_dihedral_angle_1_deg 5.823 r_angle_refined_deg 1.338 r_angle_other_deg 1.271 r_chiral_restr 0.065 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.731 r_dihedral_angle_4_deg 13.396 r_dihedral_angle_3_deg 13.389 r_dihedral_angle_1_deg 5.823 r_angle_refined_deg 1.338 r_angle_other_deg 1.271 r_chiral_restr 0.065 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1762 Nucleic Acid Atoms 488 Solvent Atoms 133 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data processing Aimless phasing PDB_EXTRACT data extraction