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Structure of human p97 ATPase L464P mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FTK
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.118 f_angle_d 1.169 f_chiral_restr 0.07 f_plane_restr 0.008 f_bond_d 0.005
Sample Human p97 L464P mutant
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 81865 Reported Resolution (Å) 4.86 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5FTK) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 64.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz 0.2.3 IMAGE ACQUISITION SerialEM 3.9 CTF CORRECTION cryoSPARC 3.1 MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT cryoSPARC 3.1 FINAL EULER ASSIGNMENT cryoSPARC 3.1 RECONSTRUCTION cryoSPARC 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION