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GSQASS segment from the Nucleoprotein of SARS-CoV-2, residues 179-184
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other ideal beta strand AAAAAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 sodium potassium tartrate, lithium sulfate, TRIS, pH 7.0
Crystal Properties Matthews coefficient Solvent content 1.29 4.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 4.77 α = 90 b = 13.6 β = 90 c = 42.44 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 12.951 93.2 0.126 0.161 0.997 3.47 2.266 809 15.771
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.39 95.9 1.045 1.306 0.567 0.69 2.432
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT ideal beta strand AAAAAA 1.301 12.951 798 79 94.438 0.248 0.2488 0.2521 0.242 0.2565 10.668
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.126 1.716 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.435 r_dihedral_angle_3_deg 11.137 r_angle_other_deg 6.804 r_dihedral_angle_1_deg 4.301 r_scangle_it 3.762 r_lrange_other 3.631 r_lrange_it 3.378 r_scangle_other 3.361 r_mcangle_other 2.48 r_mcangle_it 2.388
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.435 r_dihedral_angle_3_deg 11.137 r_angle_other_deg 6.804 r_dihedral_angle_1_deg 4.301 r_scangle_it 3.762 r_lrange_other 3.631 r_lrange_it 3.378 r_scangle_other 3.361 r_mcangle_other 2.48 r_mcangle_it 2.388 r_scbond_it 2.371 r_angle_refined_deg 1.751 r_scbond_other 1.676 r_mcbond_it 1.662 r_mcbond_other 1.411 r_nbd_other 0.236 r_symmetry_nbd_other 0.22 r_symmetry_xyhbond_nbd_refined 0.201 r_symmetry_nbtor_other 0.176 r_nbtor_refined 0.133 r_chiral_restr 0.129 r_symmetry_nbd_refined 0.111 r_nbd_refined 0.058 r_xyhbond_nbd_refined 0.037 r_bond_other_d 0.035 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 37 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction