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GQTVTK segment from the Nucleoprotein of SARS-CoV-2, residues 243-248
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 2M Ammonium Sulfate, HEPES, pH 7.5, PEG 400
Crystal Properties Matthews coefficient Solvent content 1.69 27.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 19.57 α = 90 b = 4.78 β = 93.997 c = 22.93 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 22.874 87.1 0.085 0.105 0.995 6.02 2.71 1726 11.978
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.17 50.9 0.446 0.607 0.843 1.37 2.024
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.101 22.874 1726 173 87.481 0.126 0.1237 0.129 0.1497 0.1611 10.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.474 -0.704 -0.517 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.734 r_dihedral_angle_3_deg 8.683 r_dihedral_angle_1_deg 6.254 r_lrange_it 4.085 r_angle_refined_deg 1.7 r_angle_other_deg 1.229 r_rigid_bond_restr 1.02 r_lrange_other 1.018 r_scbond_it 0.92 r_scbond_other 0.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.734 r_dihedral_angle_3_deg 8.683 r_dihedral_angle_1_deg 6.254 r_lrange_it 4.085 r_angle_refined_deg 1.7 r_angle_other_deg 1.229 r_rigid_bond_restr 1.02 r_lrange_other 1.018 r_scbond_it 0.92 r_scbond_other 0.911 r_mcangle_it 0.836 r_mcangle_other 0.83 r_scangle_it 0.728 r_scangle_other 0.724 r_mcbond_it 0.719 r_mcbond_other 0.676 r_nbd_other 0.2 r_symmetry_nbd_other 0.158 r_nbtor_refined 0.116 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.078 r_nbd_refined 0.066 r_xyhbond_nbd_refined 0.06 r_chiral_restr 0.057 r_symmetry_nbd_refined 0.048 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 44 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing