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AALALL SEGMENT FROM THE NUCLEOPROTEIN OF SARS-COV-2, RESIDUES 217-222, CRYSTAL FORM 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other ideal beta strand, AAAAAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4 298 trifluoroacetic acid
Crystal Properties Matthews coefficient Solvent content 1.69 27.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 9.45 α = 74.88 b = 11.34 β = 79.13 c = 20.27 γ = 67.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 19.47 78.4 0.084 0.107 0.985 5.92 2.366 2270 14.896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.12 1.18 31.1 0.397 0.511 0.892 2.02 2.375
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE ideal beta strand, AAAAAA 1.122 19.469 2269 227 79.114 0.159 0.1548 0.1657 0.1953 0.2195 12.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.438 -0.528 -0.809 0.262 1.611 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.602 r_dihedral_angle_1_deg 5.953 r_scangle_it 4.99 r_scbond_it 3.925 r_lrange_it 2.941 r_lrange_other 2.572 r_scangle_other 2.385 r_mcangle_other 1.978 r_mcangle_it 1.955 r_mcbond_it 1.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.602 r_dihedral_angle_1_deg 5.953 r_scangle_it 4.99 r_scbond_it 3.925 r_lrange_it 2.941 r_lrange_other 2.572 r_scangle_other 2.385 r_mcangle_other 1.978 r_mcangle_it 1.955 r_mcbond_it 1.731 r_scbond_other 1.695 r_mcbond_other 1.671 r_angle_other_deg 1.311 r_angle_refined_deg 1.306 r_rigid_bond_restr 0.872 r_nbd_other 0.208 r_symmetry_nbd_refined 0.206 r_symmetry_nbd_other 0.172 r_nbd_refined 0.136 r_nbtor_refined 0.131 r_symmetry_nbtor_other 0.105 r_symmetry_xyhbond_nbd_refined 0.09 r_chiral_restr 0.068 r_xyhbond_nbd_refined 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 80 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 21
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction