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ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UEE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.7 M Lithium sulfate, 10 % w/v Glycerol
Crystal Properties Matthews coefficient Solvent content 2.66 53.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.408 α = 90 b = 43.408 β = 90 c = 86.554 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 99 PIXEL DECTRIS EIGER X 16M 2021-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.033175 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 98.7 0.066 0.073 0.031 0.999 19.9 5.8 14626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.56 96.9 0.198 0.226 0.106 0.973 6.1 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5UEE 1.53 37.621 14547 756 98.151 0.193 0.1913 0.1952 0.2254 0.2334 16.202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 -0.001 -0.001 0.005
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 4.882 r_lrange_other 4.804 r_angle_other_deg 3.85 r_scangle_it 3.16 r_angle_refined_deg 3.091 r_scangle_other 3.05 r_scbond_it 2.141 r_scbond_other 2.044 r_chiral_restr_other 1.751 r_chiral_restr 0.505
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 4.882 r_lrange_other 4.804 r_angle_other_deg 3.85 r_scangle_it 3.16 r_angle_refined_deg 3.091 r_scangle_other 3.05 r_scbond_it 2.141 r_scbond_other 2.044 r_chiral_restr_other 1.751 r_chiral_restr 0.505 r_symmetry_nbtor_other 0.3 r_symmetry_xyhbond_nbd_refined 0.258 r_nbtor_refined 0.252 r_nbd_other 0.247 r_symmetry_nbd_other 0.212 r_xyhbond_nbd_refined 0.206 r_symmetry_nbd_refined 0.176 r_nbd_refined 0.156 r_bond_other_d 0.033 r_bond_refined_d 0.025 r_gen_planes_refined 0.023 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 378 Solvent Atoms 101 Heterogen Atoms 332
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing