7LJY
Cryo-EM structure of the B dENE construct complexed with a 28-mer poly(A)
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
r_dihedral_angle_1_deg | 12.093 |
r_angle_other_deg | 1.684 |
r_bond_other_d | 1.004 |
r_gen_planes_refined | 1.004 |
r_gen_planes_other | 1.003 |
r_angle_refined_deg | 0.898 |
r_chiral_restr | 0.161 |
r_bond_refined_d | 0.019 |
r_dihedral_angle_2_deg | |
r_dihedral_angle_3_deg |
Sample |
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dENE construct complexed with a 28-mer poly(A) |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | |
Cryogen Name | ETHANE |
Sample Vitrification Details |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 283486 |
Reported Resolution (Å) | 5.6 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 | ||||
Refinement Space | |||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 50 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | |
Maximum Defocus (nm) | |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
PARTICLE SELECTION | EMAN2 | 2.3 |
IMAGE ACQUISITION | EPU | 2.5 |
CTF CORRECTION | CTFFIND | 4.1 |
MODEL FITTING | UCSF Chimera | |
CLASSIFICATION | cryoSPARC | 2.15.0 |
RECONSTRUCTION | cryoSPARC | 2.15.0 |
MODEL REFINEMENT | REFMAC |
Image Processing | ||||
---|---|---|---|---|
CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION |