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Cryo-EM structure of the B dENE construct complexed with a 28-mer poly(A)
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.093 r_angle_other_deg 1.684 r_bond_other_d 1.004 r_gen_planes_refined 1.004 r_gen_planes_other 1.003 r_angle_refined_deg 0.898 r_chiral_restr 0.161 r_bond_refined_d 0.019 r_dihedral_angle_2_deg r_dihedral_angle_3_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.093 r_angle_other_deg 1.684 r_bond_other_d 1.004 r_gen_planes_refined 1.004 r_gen_planes_other 1.003 r_angle_refined_deg 0.898 r_chiral_restr 0.161 r_bond_refined_d 0.019 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample dENE construct complexed with a 28-mer poly(A)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 283486 Reported Resolution (Å) 5.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN2 2.3 IMAGE ACQUISITION EPU 2.5 CTF CORRECTION CTFFIND 4.1 MODEL FITTING UCSF Chimera CLASSIFICATION cryoSPARC 2.15.0 RECONSTRUCTION cryoSPARC 2.15.0 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION