7LJ4

Human TRAAK K+ channel FHEIG mutant A270P in a K+ bound conductive conformation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.827750 mM Tris pH 8.8, 64-200 mM CaCl2, 27-33%(v/v) PEG400
Crystal Properties
Matthews coefficientSolvent content
3.362.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.28α = 90
b = 136.88β = 94.24
c = 95.58γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80PIXELDECTRIS EIGER2 X 16M2019-10-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.97910APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.78247.6663.220.39060.40650.11160.9924.6913.232708
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.7823.08715.032.1672.2540.6170.55361.3236.63

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4WFE2.78247.6631089161963.210.216680.21450.2579RANDOM70.366
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.11-0.22.05-2.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.172
r_dihedral_angle_4_deg17.53
r_dihedral_angle_3_deg15.983
r_dihedral_angle_1_deg7.288
r_angle_refined_deg1.528
r_angle_other_deg1.249
r_chiral_restr0.062
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.172
r_dihedral_angle_4_deg17.53
r_dihedral_angle_3_deg15.983
r_dihedral_angle_1_deg7.288
r_angle_refined_deg1.528
r_angle_other_deg1.249
r_chiral_restr0.062
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10398
Nucleic Acid Atoms
Solvent Atoms188
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
XSCALEdata scaling