7LIT
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7G
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s) | |||
---|---|---|---|
Type | Source | Accession Code | Details |
experimental model | PDB | 3DKT |
Sample |
---|
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7G |
Specimen Preparation | |
---|---|
Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | blot force 0, wait time 30 seconds |
3D Reconstruction | |
---|---|
Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 90905 |
Reported Resolution (Å) | 2.53 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | I |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (3DKT) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | |||||
Overall B Value | 61.68 | ||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | FEI FALCON III (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 40 |
Imaging Experiment | 1 |
---|---|
Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | TFS TALOS |
Minimum Defocus (nm) | -1000 |
Maximum Defocus (nm) | -2500 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
PARTICLE SELECTION | cryoSPARC | 2.15.0 |
IMAGE ACQUISITION | Leginon | |
CTF CORRECTION | cryoSPARC | 2.15.0 |
MODEL FITTING | UCSF Chimera | |
MODEL FITTING | Coot | 0.9 |
INITIAL EULER ASSIGNMENT | cryoSPARC | 2.15.0 |
FINAL EULER ASSIGNMENT | cryoSPARC | 2.15.0 |
RECONSTRUCTION | cryoSPARC | 2.15.0 |
MODEL REFINEMENT | PHENIX | 1.18.2-3874-000 |
Image Processing | ||||
---|---|---|---|---|
CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION |