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Acanthamoeba castellanii CYP51 (AcCYP51)-Imidazole complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Q2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 296 16%PEG 3350, 2% Tacsimate pH 7.0, 0.1 M sodium citrate pH 5.2
Crystal Properties Matthews coefficient Solvent content 2.97 58.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.56 α = 90 b = 125.58 β = 90.04 c = 100.51 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M mirrors 2020-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 100.71 99.9 0.13 12.45 6.86 71061 0.3 78.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.96 99.9 2.98 0.61 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6Q2C 2.65 100.71 67857 3178 99.94 0.19611 0.19243 0.1957 0.27535 0.2705 RANDOM 80.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.96 -0.87 0.43 1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.169 r_dihedral_angle_3_deg 18.279 r_dihedral_angle_4_deg 15.456 r_long_range_B_refined 10.173 r_long_range_B_other 10.173 r_scangle_other 7.695 r_mcangle_it 7.341 r_mcangle_other 7.341 r_dihedral_angle_1_deg 6.799 r_scbond_it 4.905
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.169 r_dihedral_angle_3_deg 18.279 r_dihedral_angle_4_deg 15.456 r_long_range_B_refined 10.173 r_long_range_B_other 10.173 r_scangle_other 7.695 r_mcangle_it 7.341 r_mcangle_other 7.341 r_dihedral_angle_1_deg 6.799 r_scbond_it 4.905 r_scbond_other 4.905 r_mcbond_it 4.847 r_mcbond_other 4.847 r_angle_refined_deg 1.529 r_angle_other_deg 0.986 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14261 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 243
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing