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Pseudomonas fluorescens G150A isocyanide hydratase (G150A-3) at 274K, Refmac5-refined
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NI5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 23% PEG 3350, 100MM TRIS-HCL PH 8.6,
200 MM MAGNESIUM CHLORIDE AND 2 MM DITHIOTHREITOL
Crystal Properties Matthews coefficient Solvent content 2.2 44.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.318 α = 90 b = 58.245 β = 112.744 c = 69.095 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 274 PIXEL DECTRIS PILATUS 6M Flat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M2 2018-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.775 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.349 39.17 93 0.064 0.998 6 2.1 85576
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.349 1.38 90 1.384 0.264 0.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6NI5 1.349 39.17 84895 2602 91.948 0.121 0.1201 0.12 0.1554 0.1554 random 18.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.249 -0.18 0.261 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.001 r_dihedral_angle_4_deg 19.215 r_dihedral_angle_3_deg 13.206 r_dihedral_angle_1_deg 6.379 r_lrange_it 3.108 r_lrange_other 3.027 r_scangle_it 2.738 r_scangle_other 2.738 r_scbond_it 2.191 r_scbond_other 2.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.001 r_dihedral_angle_4_deg 19.215 r_dihedral_angle_3_deg 13.206 r_dihedral_angle_1_deg 6.379 r_lrange_it 3.108 r_lrange_other 3.027 r_scangle_it 2.738 r_scangle_other 2.738 r_scbond_it 2.191 r_scbond_other 2.191 r_mcangle_other 1.955 r_mcangle_it 1.952 r_mcbond_it 1.537 r_rigid_bond_restr 1.53 r_mcbond_other 1.529 r_angle_refined_deg 1.466 r_angle_other_deg 1.423 r_xyhbond_nbd_refined 0.224 r_nbd_refined 0.221 r_symmetry_xyhbond_nbd_refined 0.196 r_symmetry_nbd_other 0.177 r_nbd_other 0.158 r_nbtor_refined 0.157 r_symmetry_nbd_refined 0.126 r_symmetry_xyhbond_nbd_other 0.092 r_chiral_restr 0.078 r_symmetry_nbtor_other 0.078 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3374 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing