☰ Navigation Tabs
HIV Integrase core domain in complex with inhibitor 2-(5-(3-fluorophenyl)-2-(2-(thiophen-2-yl)ethynyl)-1- benzofuran-3-yl)ethanoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 2.2 M ammonium sulfate, 100 mM potassium iodide
Crystal Properties Matthews coefficient Solvent content 2.05 39.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.98 α = 90 b = 45.98 β = 90 c = 138.87 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 32.62 99.9 0.147 0.159 0.059 0.995 9.6 7.2 11041 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.03 1.322 0.514 0.731 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.982 32.62 11005 835 99.665 0.212 0.2092 0.2173 0.2494 0.2548 31.879
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.657 0.657 -1.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.934 r_dihedral_angle_3_deg 18.445 r_dihedral_angle_4_deg 14.811 r_lrange_it 9.373 r_lrange_other 9.37 r_dihedral_angle_1_deg 7.599 r_scangle_it 7.21 r_scangle_other 7.101 r_scbond_it 4.829 r_scbond_other 4.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.934 r_dihedral_angle_3_deg 18.445 r_dihedral_angle_4_deg 14.811 r_lrange_it 9.373 r_lrange_other 9.37 r_dihedral_angle_1_deg 7.599 r_scangle_it 7.21 r_scangle_other 7.101 r_scbond_it 4.829 r_scbond_other 4.673 r_mcangle_it 4.376 r_mcangle_other 4.373 r_mcbond_it 2.985 r_mcbond_other 2.983 r_angle_refined_deg 1.635 r_angle_other_deg 1.357 r_xyhbond_nbd_refined 0.326 r_nbd_other 0.247 r_symmetry_nbd_refined 0.229 r_nbd_refined 0.225 r_symmetry_nbd_other 0.195 r_symmetry_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.167 r_chiral_restr 0.085 r_symmetry_nbtor_other 0.08 r_xyhbond_nbd_other 0.029 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1069 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement Aimless data reduction Aimless data scaling REFMAC phasing