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HPK1 IN COMPLEX WITH COMPOUND 11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PREVIOUSLY SOLVED STUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 UNDISCLOSED
Crystal Properties Matthews coefficient Solvent content 2.65 53.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.874 α = 90 b = 107.669 β = 107.98 c = 85.971 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00001 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 81.77 97.6 0.038 0.049 0.999 18.54 2.4 37113 69.639
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.93 98 0.438 0.561 1 69.49 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PREVIOUSLY SOLVED STUCTURE 2.68 81.77 36323 790 97.72 0.2267 0.2257 0.2284 0.272 0.2787 RANDOM 82.986
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.05 -0.24 3.23 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.113 r_dihedral_angle_4_deg 20.365 r_dihedral_angle_3_deg 13.326 r_dihedral_angle_1_deg 5.182 r_angle_other_deg 2.141 r_angle_refined_deg 1.362 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.113 r_dihedral_angle_4_deg 20.365 r_dihedral_angle_3_deg 13.326 r_dihedral_angle_1_deg 5.182 r_angle_other_deg 2.141 r_angle_refined_deg 1.362 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8789 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 124
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction