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Botulism Neurooxin Light Chain A app form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HEV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 50mM sodium cacodylate pH 7.0, 200 mM ammonium sulfate, 30% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.3 46.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.315 α = 103.78 b = 84.05 β = 91.84 c = 99.723 γ = 108.67
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS RDI CMOS_8M 2019-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.97625 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 48.14 95.14 0.991 2.6 1.9 35479
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.91 9.09 0.998
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4hev 2.91 48.09 33183 2297 95.14 0.1399 0.1377 0.173 0.2433 RANDOM 62.611
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.03 0.26 0.23 0.11 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.029 r_dihedral_angle_3_deg 18.603 r_dihedral_angle_4_deg 14.781 r_dihedral_angle_1_deg 11.64 r_angle_refined_deg 1.841 r_angle_other_deg 1.086 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.029 r_dihedral_angle_3_deg 18.603 r_dihedral_angle_4_deg 14.781 r_dihedral_angle_1_deg 11.64 r_angle_refined_deg 1.841 r_angle_other_deg 1.086 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12508 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing