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Botulism Neurooxin Light Chain A app form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HEV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 50 mM sodium cacodylate pH 7.0, 200 mM ammonium sulfate, and 30% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.19 43.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.029 α = 90 b = 56.985 β = 90.26 c = 192.136 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS RDI CMOS_8M 2019-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.9763 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 49.01 99.32 0.967 4.4 1 21424
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HEV 2.78 49.01 20732 693 99.32 0.1294 0.128 0.124 0.1698 0.1435 RANDOM 47.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.03 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.584 r_dihedral_angle_3_deg 19.339 r_dihedral_angle_4_deg 18.262 r_dihedral_angle_1_deg 8.909 r_angle_refined_deg 1.702 r_angle_other_deg 1.293 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.584 r_dihedral_angle_3_deg 19.339 r_dihedral_angle_4_deg 18.262 r_dihedral_angle_1_deg 8.909 r_angle_refined_deg 1.702 r_angle_other_deg 1.293 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6398 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XPREP data scaling PDB_EXTRACT data extraction Aimless data reduction PHASER phasing