7KXI
Structure of XL5-ligated hRpn13 Pru domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.4 mM [U-13C] 13C_protein, 0.48 mM ligand | 20% H2O/70% D2O/10% DMSO | 0.11 M | 6.5 | ambient atm | 283.15 | Bruker AVANCE III 850 |
2 | 3D 1H-15N NOESY | 0.25 mM [U-15N] protein, 0.5 mM ligand | 90% H2O/10% DMSO | 0.11 M | 6.5 | ambient atm | 283.15 | Bruker AVANCE III 850 |
3 | 3D 1H-13C half-filtered NOESY | 0.25 mM [U-13C] 13C_protein, 0.5 mM ligand | 90% H2O/10% DMSO | 0.11 M | 6.5 | ambient atm | 283.15 | Bruker AVANCE III 850 |
4 | 2D 1H-13C half-filtered NOESY | 0.5 mM protein, 0.5 mM [U-13C] ligand | 90% H2O/10% DMSO | 0.11 M | 6.5 | ambient atm | 283.15 | Bruker AVANCE III 850 |
5 | 3D 1H-13C half-filtered NOESY | 0.4 mM protein, 0.4 mM [U-13C] ligand | 20% H2O/70% D2O/10% DMSO | 0.11 M | 6.5 | ambient atm | 283.15 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
3 | Bruker | AVANCE III | 850 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | chemical shift assignment | XEASY | Bartels et al. | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |