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Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UCT
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.5392 f_angle_d 0.8446 f_chiral_restr 0.0492 f_plane_restr 0.0049 f_bond_d 0.0048
Sample Decameric complex of Mal de Rio Cuarto virus P9-1 viroplasm protein
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM CPC Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 99682 Reported Resolution (Å) 4.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D5
Map-Model Fitting and Refinement Id 1 (6UCT) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Correlation coefficient Overall B Value 170 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) 3800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification 120000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Xmipp IMAGE ACQUISITION Scipion CTF CORRECTION Gctf MODEL FITTING PHENIX INITIAL EULER ASSIGNMENT Scipion FINAL EULER ASSIGNMENT Scipion CLASSIFICATION Scipion RECONSTRUCTION Scipion MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 202824