☰ Navigation Tabs
Crystal structure on Act c 10.0101
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RZL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4 295 0.1 M citric acid buffer, pH 4.0 with 3.0 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 1.87 34.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.812 α = 90 b = 38.13 β = 98.86 c = 48.414 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2017-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 40 98.7 0.113 0.057 25.1 4 10217
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 98.2 0.483 0.24 0.904 4.3 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1RZL 1.95 27.91 9707 503 98.41 0.2021 0.1993 0.2572 0.2578 RANDOM 26.802
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 -3.07 -0.73 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.181 r_dihedral_angle_4_deg 16.907 r_dihedral_angle_3_deg 13.54 r_dihedral_angle_1_deg 5.213 r_angle_refined_deg 1.784 r_angle_other_deg 1.569 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.181 r_dihedral_angle_4_deg 16.907 r_dihedral_angle_3_deg 13.54 r_dihedral_angle_1_deg 5.213 r_angle_refined_deg 1.784 r_angle_other_deg 1.569 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1306 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing