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Human Tom70 in complex with SARS CoV2 Orf9b
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FP3
Sample Orf9b-Tom70 complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot for 5 seconds before plunging into liquid ethane
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 178373 Reported Resolution (Å) 3.05 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (3FP3) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 66
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v2.15.0 IMAGE ACQUISITION SerialEM 3,8 CTF CORRECTION cryoSPARC v2.15.0 MODEL FITTING Rosetta 2020.08.61146 FINAL EULER ASSIGNMENT cryoSPARC v2.15.0 RECONSTRUCTION cryoSPARC v2.15.0 MODEL REFINEMENT Rosetta 2020.08.61146 MODEL REFINEMENT ISOLDE 1.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Done at the reconstruction stage as is standard for cryoSPARC 2805121 Template picked based on previous low resolution reconstruction (which was picked with a blob picker)