☰ Navigation Tabs
Factor VIII in complex with the anti-C2 domain antibody, G99
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MF0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 8 - 18% PEG 1500, PEG 6K, or PEG 10K and 50mM malic acid, pH 7.
Crystal Properties Matthews coefficient Solvent content 3.85 68.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.243 α = 90 b = 132.243 β = 90 c = 380.029 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS3 S 6M 2019-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.15 25.48 99.08 0.06373 0.09012 0.06373 0.998 6.31 2 26284 195.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.15 4.298 98.31 1.359 1.922 1.359 0.373 0.48 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6MF0 4.15 25.48 1.33 26198 1987 99.08 0.302 0.2998 0.3027 0.3384 0.3379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.221 f_angle_d 1.074 f_chiral_restr 0.059 f_plane_restr 0.008 f_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11293 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 73
Software Software Software Name Purpose PHENIX refinement Adxv data reduction XDS data reduction PHASER phasing Aimless data scaling Coot model building