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Crystal structure of human CPSF30 in complex with hFip1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.7 293 0.1 M sodium malonate, 16% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.52 51.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.04 α = 90 b = 79.04 β = 90 c = 48.662 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9792 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.66 100 0.046 0.048 0.013 1 30.9 12.6 13793
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 99.9 0.874 0.917 0.788 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 39.55 13086 690 99.91 0.1811 0.1793 0.1857 0.2092 0.2088 RANDOM 52.784
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.1 0.2 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.479 r_dihedral_angle_3_deg 16.798 r_dihedral_angle_4_deg 16.393 r_dihedral_angle_1_deg 7.088 r_angle_refined_deg 1.984 r_angle_other_deg 1.434 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.479 r_dihedral_angle_3_deg 16.798 r_dihedral_angle_4_deg 16.393 r_dihedral_angle_1_deg 7.088 r_angle_refined_deg 1.984 r_angle_other_deg 1.434 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1043 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 2
Software Software Software Name Purpose XDS data reduction Aimless data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction