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Aminoglycoside N-2'-Acetyltransferase-Ia [AAC(2')-Ia] in complex with CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5US1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295.15 ammonium sulfate, PEG 400, HEPES
Crystal Properties Matthews coefficient Solvent content 2.51 50.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.72 α = 90 b = 58.72 β = 90 c = 120.05 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON II 2017-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 52.75 99.95 1 28.09 12.1 52444
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.346 0.646 2.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5US1 1.3 52.75 49768 2675 99.96 0.14039 0.13809 0.18425 0.208 RANDOM 27.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_sphericity_free 31.317 r_dihedral_angle_4_deg 17.666 r_sphericity_bonded 17.215 r_dihedral_angle_3_deg 14.027 r_scangle_other 7.882 r_long_range_B_refined 7.32 r_long_range_B_other 7.32 r_dihedral_angle_1_deg 6.891 r_scbond_it 6.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_sphericity_free 31.317 r_dihedral_angle_4_deg 17.666 r_sphericity_bonded 17.215 r_dihedral_angle_3_deg 14.027 r_scangle_other 7.882 r_long_range_B_refined 7.32 r_long_range_B_other 7.32 r_dihedral_angle_1_deg 6.891 r_scbond_it 6.852 r_scbond_other 6.852 r_rigid_bond_restr 6.25 r_mcangle_it 4.97 r_mcangle_other 4.968 r_mcbond_it 4.316 r_mcbond_other 4.301 r_angle_refined_deg 2.528 r_angle_other_deg 1.222 r_chiral_restr 0.157 r_bond_refined_d 0.031 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1434 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling PHASER phasing