7JYZ

Solution NMR structure and dynamics of human Brd3 ET in complex with MLV IN CTD


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
22D 1H-13C HSQC0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
32D 1H-15N HSQC-TROSY0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
43D HNCO0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
53D HNCA0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
113D HN(CO)CA0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
103D HNCACB0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
93D CBCA(CO)NH0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
83D HBHA(CO)NH0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
73D HNHA0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
63D HCCH-COSY0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
153D HCCH-TOCSY0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
143D 13C-15N_simNOESY0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
133D 13C-NOESY-aromatic0.25 mM [U-100% 13C; U-100% 15N] Brd3 ET, 0.25 mM [U-100% 13C; U-100% 15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.01 atm298Bruker AVANCE 800
122D 15N-T1-relaxation0.25 mM [U-15N] Brd3 ET, 0.25 mM [U-15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.21 atm298Bruker AVANCE III HD 600
162D 15N-T2-relaxation0.25 mM [U-15N] Brd3 ET, 0.25 mM [U-15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.21 atm298Bruker AVANCE III HD 600
172D HNOE0.25 mM [U-15N] Brd3 ET, 0.25 mM [U-15N] MLV-IN-CTD, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM 2-mercaptoethanol90% H2O/10% D2O100 mM NaCl mM7.21 atm298Bruker AVANCE III HD 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.3b, 3.2Bruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingSparkyGoddard
4data analysisSparkyGoddard
5chemical shift assignmentAutoAssign2.4Zimmerman, Moseley, Kulikowski and Montelione
6chemical shift assignmentI-PINELee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley
7geometry optimizationASDP2.3Huang, Y. et al.
8structure calculationASDP2.3Huang, Y. et al.
9structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
10refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read