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Crystal structure of a lambda-186 hybrid repressor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FJR 2FJR,3BDN experimental model PDB 3BDN 2FJR,3BDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289.15 0.08 M sodium chloride, 0.012 M potassium chloride, 0.04 sodium cacodylate trihydrate pH 8.0, 30% w/v (+/-)-2-methyl-2,4-pentadiol, 0.012 M spermine tetrahydrochloride
Crystal Properties Matthews coefficient Solvent content 2.76 55.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.338 α = 90 b = 177.338 β = 90 c = 108.607 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2015-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.16 44.34 99.8 0.135 0.14 0.037 0.999 14.6 14.5 11372
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.16 3.38 99.4 0.738 0.765 0.2 0.91 14.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2FJR,3BDN 3.16 36.2 1.34 11353 1142 99.8 0.2336 0.2282 0.23 0.2814 0.282 84.9896
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3052 Nucleic Acid Atoms 779 Solvent Atoms 51 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection XDS data reduction Aimless data scaling PHASER phasing PHENIX refinement PDB_EXTRACT data extraction