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Neutron structure of ferric Dehaloperoxidase B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other room temperature x-ray structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 mPEG 2000, ammonium sulfate, cacodylate buffer
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.444 α = 90 b = 66.12 β = 90 c = 68.377 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 298 IMAGE PLATE MAATEL IMAGINE 2016-07-07 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 NUCLEAR REACTOR ORNL High Flux Isotope Reactor BEAMLINE CG4D 2-4.5 ORNL High Flux Isotope Reactor CG4D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 17.23 79.2 0.118 4.8 5.4 15930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 66.3 20.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B NEUTRON DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE room temperature x-ray structure 2.05 17.23 15930 77.6 0.2491 0.288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.093 f_angle_d 1.573 f_chiral_restr 0.056 f_bond_d 0.025 f_plane_restr 0.005
Software Software Software Name Purpose PHENIX refinement SCALA data scaling PHASER phasing LAUEGEN data reduction