7JI1

NMR structure of the Streptococcus pyogenes NAD+-glycohydrolase translocation domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 15N-edited NOESY-TROSY-HSQC1 mM [U-13C; U-15N] NADase translocation domain, 20mM MES, 50mM NaCl90% H2O/10% D2O50mM NaCl mM5.5ambient303Bruker AVANCE III 800
23D 13C-edited NOESY1 mM [U-13C; U-15N] NADase translocation domain, 20mM MES, 50mM NaCl90% H2O/10% D2O50mM NaCl mM5.5ambient303Bruker AVANCE III 800
32D 1H-15N TROSY HSQC0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
43D TROSY HNCA0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
53D TROSY HNCACB0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
63D TROSY HN(CA)CO0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
73D TROSY HNCO0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
83D TROSY HN(CO)CA0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA90% H2O/10% D2O80mM NaCl mM5.5ambient303Bruker AVANCE III HD 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
2BrukerAVANCE III HD600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteria15 structures for lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentCARAKeller and Wuthrich
4chemical shift assignmentXEASYBartels et al.
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6data analysisSparkyGoddard
7collectionTopSpinBruker Biospin