☰ Navigation Tabs
Structure of the G304E mutant of CueO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OD3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 3350, KNO3
Crystal Properties Matthews coefficient Solvent content 2.03 39.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.892 α = 90 b = 62.287 β = 96.153 c = 96.653 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.00000 SPring-8 BL32XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 48.993 97.8 0.198 0.97 3.95 1.79 43540
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.88 95.1 1.288 0.466 0.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3od3 1.773 48.335 43540 2225 98.605 0.208 0.2056 0.2155 0.2533 0.2623 43.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.362 -0.971 -0.171 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.212 r_dihedral_angle_4_deg 17.325 r_dihedral_angle_3_deg 16.055 r_dihedral_angle_1_deg 8.169 r_lrange_it 7.787 r_lrange_other 7.776 r_scangle_other 5.788 r_scangle_it 5.783 r_mcangle_it 4.593 r_mcangle_other 4.593
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.212 r_dihedral_angle_4_deg 17.325 r_dihedral_angle_3_deg 16.055 r_dihedral_angle_1_deg 8.169 r_lrange_it 7.787 r_lrange_other 7.776 r_scangle_other 5.788 r_scangle_it 5.783 r_mcangle_it 4.593 r_mcangle_other 4.593 r_scbond_it 3.911 r_scbond_other 3.91 r_mcbond_other 3.463 r_mcbond_it 3.462 r_angle_refined_deg 1.589 r_angle_other_deg 1.235 r_nbd_other 0.211 r_symmetry_nbd_refined 0.209 r_nbd_refined 0.2 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.157 r_xyhbond_nbd_refined 0.147 r_symmetry_xyhbond_nbd_refined 0.114 r_symmetry_xyhbond_nbd_other 0.101 r_metal_ion_refined 0.101 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3417 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement DIALS data reduction XSCALE data scaling BALBES phasing