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The N-terminal crystal structure of SARS-CoV-2 NSP2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 PEG
Crystal Properties Matthews coefficient Solvent content 2.36 47.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.926 α = 90 b = 159.603 β = 91.194 c = 63.552 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2020-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9793 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 50 93 0.999 17.9 6 89477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.06 0.999
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.96 42.4 79154 4021 95.909 0.201 0.1997 0.2256 0.2055 31.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.057 0.053 -0.317 0.258
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.176 r_dihedral_angle_4_deg 15.558 r_dihedral_angle_3_deg 14.805 r_dihedral_angle_1_deg 6.403 r_lrange_it 4.495 r_lrange_other 4.434 r_mcangle_it 2.182 r_mcangle_other 2.182 r_scangle_it 2.152 r_scangle_other 2.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.176 r_dihedral_angle_4_deg 15.558 r_dihedral_angle_3_deg 14.805 r_dihedral_angle_1_deg 6.403 r_lrange_it 4.495 r_lrange_other 4.434 r_mcangle_it 2.182 r_mcangle_other 2.182 r_scangle_it 2.152 r_scangle_other 2.152 r_angle_refined_deg 1.285 r_scbond_it 1.283 r_scbond_other 1.283 r_mcbond_it 1.262 r_mcbond_other 1.262 r_angle_other_deg 1.15 r_symmetry_nbd_other 0.171 r_nbd_other 0.17 r_nbd_refined 0.164 r_nbtor_refined 0.154 r_xyhbond_nbd_refined 0.135 r_symmetry_nbd_refined 0.129 r_symmetry_xyhbond_nbd_refined 0.115 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.045 r_symmetry_xyhbond_nbd_other 0.027 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8394 Nucleic Acid Atoms Solvent Atoms 925 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL2Map phasing