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Mycobacterium tuberculosis HigA2 (Form I)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y7Y 1Y7Y, 3B7H, 3KXA, 2A6C experimental model PDB 3B7H 1Y7Y, 3B7H, 3KXA, 2A6C experimental model PDB 3KXA 1Y7Y, 3B7H, 3KXA, 2A6C experimental model PDB 2A6C 1Y7Y, 3B7H, 3KXA, 2A6C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 11% (w/v) PEK 20000, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.73 28.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.61 α = 90 b = 88.955 β = 90 c = 114.961 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.98 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 40 99.8 0.079 0.99 29 6 20447
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 0.984
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Y7Y, 3B7H, 3KXA, 2A6C 2.05 35.22 19459 988 99.64 0.209 0.207 0.2177 0.2471 0.2528 RANDOM 35.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.05 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.181 r_dihedral_angle_3_deg 20.284 r_dihedral_angle_4_deg 17.454 r_dihedral_angle_1_deg 6.59 r_angle_refined_deg 1.693 r_angle_other_deg 1.421 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.181 r_dihedral_angle_3_deg 20.284 r_dihedral_angle_4_deg 17.454 r_dihedral_angle_1_deg 6.59 r_angle_refined_deg 1.693 r_angle_other_deg 1.421 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2107 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing