7EV4

Crystal structure of the Lon-like protease MtaLonC with S582A mutation in complex with F-b20-Q


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.629510% isopropanol, 100 mM monosodium phosphate, 100 mM sodium citrate at pH 4.6.
Crystal Properties
Matthews coefficientSolvent content
3.2361.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 115.597α = 90
b = 115.597β = 90
c = 135.482γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 65002011-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU1SPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.123099.90.11321.511.558112
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.122.21000.6983.911.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4FW92.1229.9355096293499.630.18250.18050.22RANDOM40.42
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.07-0.130.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.952
r_dihedral_angle_4_deg21.235
r_dihedral_angle_3_deg16.256
r_dihedral_angle_1_deg8.021
r_angle_refined_deg1.799
r_angle_other_deg1.446
r_chiral_restr0.083
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.952
r_dihedral_angle_4_deg21.235
r_dihedral_angle_3_deg16.256
r_dihedral_angle_1_deg8.021
r_angle_refined_deg1.799
r_angle_other_deg1.446
r_chiral_restr0.083
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4581
Nucleic Acid Atoms
Solvent Atoms372
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing