7EML

Structure of IrCp* immobilized apo-D38H-rHLFr

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	Ammonium sulfate (0.5-1.0M), Cadmium sulfate(12-20mM)

Crystal Properties
Matthews coefficient	Solvent content
3.19	61.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 181.937	α = 90
b = 181.937	β = 90
c = 181.937	γ = 90

Symmetry
Space Group	F 4 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-06-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL45XU	1.05	SPring-8	BL45XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.25	45.526	100	0.2	0.999	23.1	72.5		71305

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.25	1.27			0.82	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1DAT	1.25	41.739	71303	3571	99.989	0.172	0.1714	0.1828	14.399

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.339
r_dihedral_angle_4_deg	18.42
r_dihedral_angle_3_deg	13.427
r_lrange_it	5.98
r_lrange_other	5.704
r_dihedral_angle_1_deg	4.654
r_scangle_it	3.98
r_scangle_other	3.964
r_scbond_it	2.695
r_scbond_other	2.611
r_mcangle_it	2.293
r_mcangle_other	2.292
r_angle_refined_deg	2.201
r_angle_other_deg	1.581
r_mcbond_it	1.49
r_mcbond_other	1.482
r_symmetry_metal_ion_refined	0.41
r_symmetry_nbd_refined	0.33
r_metal_ion_refined	0.312
r_nbd_refined	0.293
r_xyhbond_nbd_refined	0.249
r_nbd_other	0.205
r_symmetry_nbd_other	0.2
r_nbtor_refined	0.193
r_symmetry_xyhbond_nbd_refined	0.17
r_chiral_restr	0.124
r_symmetry_nbtor_other	0.097
r_bond_refined_d	0.02
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1381
Nucleic Acid Atoms
Solvent Atoms	238
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing
Coot	model building