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Fab-amyloid beta fragment complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 PEGMME5000, magnesium formate, sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.59 52.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.049 α = 90 b = 40.464 β = 97.219 c = 69.379 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 4M 2020-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 1.0000 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45.9 100 0.998 17 6.8 18065
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 0.958
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.5 45.9 18065 873 99.917 0.194 0.1913 0.244 0.1677 29.257
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.496 1.09 -1.358 1.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.709 r_dihedral_angle_4_deg 21.447 r_dihedral_angle_3_deg 16.457 r_dihedral_angle_1_deg 7.802 r_lrange_other 5.802 r_lrange_it 5.773 r_scangle_other 4.025 r_scangle_it 4.008 r_mcangle_it 3.601 r_mcangle_other 3.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.709 r_dihedral_angle_4_deg 21.447 r_dihedral_angle_3_deg 16.457 r_dihedral_angle_1_deg 7.802 r_lrange_other 5.802 r_lrange_it 5.773 r_scangle_other 4.025 r_scangle_it 4.008 r_mcangle_it 3.601 r_mcangle_other 3.6 r_scbond_other 2.569 r_scbond_it 2.533 r_mcbond_it 2.235 r_mcbond_other 2.235 r_angle_refined_deg 1.277 r_angle_other_deg 1.246 r_symmetry_nbd_refined 0.358 r_nbd_other 0.213 r_symmetry_nbd_other 0.211 r_nbd_refined 0.186 r_nbtor_refined 0.161 r_symmetry_xyhbond_nbd_refined 0.144 r_xyhbond_nbd_refined 0.127 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.055 r_symmetry_xyhbond_nbd_other 0.043 r_gen_planes_refined 0.007 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3436 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing