X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.32950.2 M Ammonium Chloride:NaOH pH 6.3, 20% (w/v) PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.4650.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.66α = 90
b = 34.66β = 90
c = 162.227γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.97951ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6340.5699.90.0670.99912.6723505
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6351.6630.7230.80626.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGTHROUGHOUT1.6340.5622398110699.890.1740.171770.21794RANDOM38.852
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-21.21-21.2142.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg23.897
r_dihedral_angle_4_deg16.282
r_dihedral_angle_3_deg13.89
r_dihedral_angle_1_deg6.13
r_long_range_B_refined4.879
r_long_range_B_other4.738
r_rigid_bond_restr4.025
r_scangle_other3.8
r_mcangle_it3.19
r_mcangle_other3.189
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg23.897
r_dihedral_angle_4_deg16.282
r_dihedral_angle_3_deg13.89
r_dihedral_angle_1_deg6.13
r_long_range_B_refined4.879
r_long_range_B_other4.738
r_rigid_bond_restr4.025
r_scangle_other3.8
r_mcangle_it3.19
r_mcangle_other3.189
r_scbond_it2.909
r_scbond_other2.907
r_mcbond_it2.518
r_mcbond_other2.512
r_angle_refined_deg1.568
r_angle_other_deg1.273
r_chiral_restr0.064
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1360
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDEphasing